Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers B323;C139
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.5%
CheckM Contamination 2.27%
CheckM Strain Heterogeneity 22.22
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,243
N50 Contigs 5,649 bp
Longest Contig 28,187 bp
Scaffold Count 1,172
N50 Scaffolds 5,812 bp
Longest Scaffold 28,187 bp
Genome Size 3,667,205 bp
Protein Count 4,358
Coding Density 89.07%
GC Percentage 67.57%
Ambiguous Bases 1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5601_3#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA751241
Country USA
Date 2015-7-20
Genbank Assembly Accession GCA_001194095.1
Genome Category Isolate
Genome Representation full
Isolate C139
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,128
Refseq Category na
Seq Rel Date 2015/07/20
Spanned Gaps 71
Species Taxid 520
SSU Count 1
Submitter SC
Taxid 520
Total Gap Length 11706
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CSOH00000000.1