Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN026781
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 132
N50 Contigs 142,960 bp
Longest Contig 252,890 bp
Scaffold Count 131
N50 Scaffolds 142,960 bp
Longest Scaffold 365,526 bp
Genome Size 5,056,723 bp
Protein Count 4,852
Coding Density 88.16%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CFSAN026781_02-NGE.clc
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455796
Country USA
Date 2015-8-3
Genbank Assembly Accession GCA_001191315.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,233
Refseq Category na
Seq Rel Date 2015/08/03
Spanned Gaps 1
Species Taxid 562
SSU Count 1
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 23
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGZW00000000.1