Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers CFSAN026794
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 105
N50 Contigs 143,068 bp
Longest Contig 574,633 bp
Scaffold Count 105
N50 Scaffolds 143,068 bp
Longest Scaffold 574,633 bp
Genome Size 5,014,227 bp
Protein Count 4,722
Coding Density 87.92%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN026794_01-NGE.clc
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455809
Country USA
Date 2015-8-3
Genbank Assembly Accession GCA_001191205.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,122
Refseq Category na
Seq Rel Date 2015/08/03
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter FDA/CFSAN
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 82
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGZH00000000.1