Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis; x__Yersinia pestis 14735
NCBI Strain Identifiers 14735
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.79%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 4
23S Count 3
tRNA Count 20
Contig Count 29
N50 Contigs 231,933 bp
Longest Contig 624,366 bp
Scaffold Count 29
N50 Scaffolds 231,933 bp
Longest Scaffold 624,366 bp
Genome Size 4,693,748 bp
Protein Count 4,262
Coding Density 83.74%
GC Percentage 47.68%
Ambiguous Bases N/A
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name YPY_1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03943539
Country Georgia: Ninotsminda
Date 2015-7-29
Genbank Assembly Accession GCA_001188325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 2
CDS Count 4,417
Refseq Category na
Seq Rel Date 2015/07/29
Spanned Gaps 0
Species Taxid 632
SSU Count 4
Submitter Los Alamos National Laboratory
Taxid 1345709
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AYLS00000000.1