Octadecabacter temperatus
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Octadecabacter; s__Octadecabacter temperatus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Octadecabacter; s__Octadecabacter temperatus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Octadecabacter; s__Octadecabacter temperatus
NCBI Strain Identifiers SB1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 0.61%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 2
N50 Contigs 3,233,068 bp
Longest Contig 3,233,068 bp
Scaffold Count 2
N50 Scaffolds 3,233,068 bp
Longest Scaffold 3,233,068 bp
Genome Size 3,264,628 bp
Protein Count 3,302
Coding Density 91.74%
GC Percentage 54.68%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM118784v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03891579
Country Germany: Helgoland harbor
Date 2015-7-28
Genbank Assembly Accession GCA_001187845.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source surface water of the southern North Sea
Latitude Longitude 54.188 N 7.898 E
Molecule Count 2
CDS Count 3,247
Refseq Category representative genome
Seq Rel Date 2015/07/28
Spanned Gaps 0
Species Taxid 1458307
SSU Count 1
Submitter Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory
Taxid 1458307
Total Gap Length 0
Translation Table 11
tRNA Count (total) 38
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None