Bordetella pertussis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Bordetella; s__Bordetella pertussis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Alcaligenaceae; g__Bordetella; s__Bordetella pertussis
NCBI Strain Identifiers BpC90
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001525555.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 322
N50 Contigs 20,184 bp
Longest Contig 69,141 bp
Scaffold Count 299
N50 Scaffolds 20,184 bp
Longest Scaffold 69,141 bp
Genome Size 3,876,671 bp
Protein Count 3,707
Coding Density 89.67%
GC Percentage 67.79%
Ambiguous Bases 2
GTDB representative GCA_001525555.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM118740v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03784877
Country Italy
Date 2015-7-24
Genbank Assembly Accession GCA_001187405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharyngeal aspirate
Latitude Longitude 41.9 N 12.41 E
Molecule Count N/A
CDS Count 3,676
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 23
Species Taxid 520
SSU Count 3
Submitter Istituto Superiore di Sanita'
Taxid 520
Total Gap Length 1292
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFUE00000000.1