Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1
NCBI Strain Identifiers EM-1542
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 128
N50 Contigs 170,395 bp
Longest Contig 392,562 bp
Scaffold Count 128
N50 Scaffolds 170,395 bp
Longest Scaffold 392,562 bp
Genome Size 4,055,638 bp
Protein Count 3,620
Coding Density 87.39%
GC Percentage 47.46%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM118725v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03839340
Country Bangladesh
Date 2015-07-24
Genbank Assembly Accession GCA_001187255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source pond water
Latitude Longitude None
Molecule Count N/A
CDS Count 3,823
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 0
Species Taxid 666
SSU Count 1
Submitter University of maryland
Taxid 127906
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGNY00000000.1