Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1
NCBI Strain Identifiers NHCM-053
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 78
N50 Contigs 180,446 bp
Longest Contig 573,334 bp
Scaffold Count 78
N50 Scaffolds 180,446 bp
Longest Scaffold 573,334 bp
Genome Size 4,056,015 bp
Protein Count 3,616
Coding Density 87.35%
GC Percentage 47.46%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM118710v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03839379
Country Bangladesh
Date 2015-07-24
Genbank Assembly Accession GCA_001187105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,811
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 0
Species Taxid 666
SSU Count 3
Submitter University of maryland
Taxid 127906
Total Gap Length 0
Translation Table 11
tRNA Count (total) 90
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGOT00000000.1