Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae; x__Vibrio cholerae O1
NCBI Strain Identifiers NHCM-016A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 88
N50 Contigs 170,452 bp
Longest Contig 535,896 bp
Scaffold Count 88
N50 Scaffolds 170,452 bp
Longest Scaffold 535,896 bp
Genome Size 4,054,882 bp
Protein Count 3,617
Coding Density 87.35%
GC Percentage 47.46%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM118696v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03839369
Country Bangladesh
Date 2015-07-24
Genbank Assembly Accession GCA_001186965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 3,812
Refseq Category na
Seq Rel Date 2015/07/24
Spanned Gaps 0
Species Taxid 666
SSU Count 3
Submitter University of maryland
Taxid 127906
Total Gap Length 0
Translation Table 11
tRNA Count (total) 92
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LGOJ00000000.1