Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio harveyi
NCBI Strain Identifiers H6
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.09%
CheckM Contamination 2.29%
CheckM Strain Heterogeneity 60.87
5S Count 1
16S Count 2
23S Count 1
tRNA Count 16
Contig Count 1,757
N50 Contigs 5,949 bp
Longest Contig 39,608 bp
Scaffold Count 1,757
N50 Scaffolds 5,949 bp
Longest Scaffold 39,608 bp
Genome Size 5,531,962 bp
Protein Count 5,936
Coding Density 87.44%
GC Percentage 45.00%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM118546v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02948029
Country Bahamas: Chub Cay
Date 2015-7-22
Genbank Assembly Accession GCA_001185465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source squirrelfish gut
Latitude Longitude None
Molecule Count N/A
CDS Count 5,801
Refseq Category na
Seq Rel Date 2015/07/22
Spanned Gaps 0
Species Taxid 669
SSU Count 4
Submitter Naval Research Laboratory
Taxid 669
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPTS00000000.1