Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio campbellii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio campbellii
NCBI Strain Identifiers CAIM115
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 98.33%
CheckM Contamination 0.88%
CheckM Strain Heterogeneity 42.86
5S Count 7
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 724
N50 Contigs 21,972 bp
Longest Contig 101,395 bp
Scaffold Count 724
N50 Scaffolds 21,972 bp
Longest Scaffold 101,395 bp
Genome Size 5,673,694 bp
Protein Count 5,356
Coding Density 87.25%
GC Percentage 45.46%
Ambiguous Bases 0
GTDB representative GCF_002163755.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM118527v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02948015
Country Mexico
Date 2015-7-22
Genbank Assembly Accession GCA_001185275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Shrimp hemolymph
Latitude Longitude None
Molecule Count 0
Protein Count 5,331
Refseq Category na
Seq Rel Date 2015/07/22
Spanned Gaps 0
Species Taxid 680
SSU Count 4
Submitter Naval Research Laboratory
Taxid 680
Total Gap Length 0
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPTG00000000.1