Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B00621
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 123
N50 Contigs 32,308 bp
Longest Contig 79,262 bp
Scaffold Count 96
N50 Scaffolds 35,166 bp
Longest Scaffold 162,978 bp
Genome Size 2,020,986 bp
Protein Count 2,002
Coding Density 86.12%
GC Percentage 39.71%
Ambiguous Bases 6
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5366_8#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682397
Country Thailand: Maela
Date 2015-7-16
Genbank Assembly Accession GCA_001169405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,155
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 27
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 1862
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPPP00000000.1