Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 4PYM0;CH2083
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 169
N50 Contigs 39,912 bp
Longest Contig 94,864 bp
Scaffold Count 169
N50 Scaffolds 39,912 bp
Longest Scaffold 94,864 bp
Genome Size 1,998,596 bp
Protein Count 2,004
Coding Density 86.22%
GC Percentage 39.70%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 7622_3#65
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1463201
Country USA: Massachesetts
Date 2015-7-29
Genbank Assembly Accession GCA_001168665.2
Genome Category Isolate
Genome Representation full
Isolate 4PYM0
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,128
Refseq Category na
Seq Rel Date 2015/07/29
Spanned Gaps 0
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 0
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master COCG00000000.2