Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers spnIC426
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.82%
CheckM Contamination 1.06%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 429
N50 Contigs 9,440 bp
Longest Contig 48,744 bp
Scaffold Count 363
N50 Scaffolds 10,826 bp
Longest Scaffold 48,744 bp
Genome Size 2,158,333 bp
Protein Count 2,210
Coding Density 85.18%
GC Percentage 39.62%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5392_7#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682525
Country Iceland: Reykjavik
Date 2015-7-15
Genbank Assembly Accession GCA_001168645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source middle ear
Latitude Longitude None
Molecule Count N/A
CDS Count 2,357
Refseq Category na
Seq Rel Date 2015/07/15
Spanned Gaps 66
Species Taxid 1313
SSU Count 4
Submitter SC
Taxid 1313
Total Gap Length 19105
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPKU00000000.1