Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers 5504
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 45
N50 Contigs 204,309 bp
Longest Contig 719,525 bp
Scaffold Count 45
N50 Scaffolds 204,309 bp
Longest Scaffold 719,525 bp
Genome Size 4,731,737 bp
Protein Count 4,596
Coding Density 87.34%
GC Percentage 52.10%
Ambiguous Bases 3
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 10592_2#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1929451
Country Pakistan
Date 2015-7-10
Genbank Assembly Accession GCA_001165305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,821
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CJIR00000000.1