Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers LMG779
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 92
N50 Contigs 36,393 bp
Longest Contig 129,824 bp
Scaffold Count 91
N50 Scaffolds 36,398 bp
Longest Scaffold 129,824 bp
Genome Size 2,028,571 bp
Protein Count 2,011
Coding Density 85.93%
GC Percentage 39.69%
Ambiguous Bases 6
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6246_2#16
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1020162
Country Thailand
Date 2015-7-16
Genbank Assembly Accession GCA_001164945.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,184
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 1
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 13
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPNX00000000.1