Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B06515
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 98.27%
CheckM Contamination 2.29%
CheckM Strain Heterogeneity 95.45
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 274
N50 Contigs 16,093 bp
Longest Contig 60,884 bp
Scaffold Count 242
N50 Scaffolds 25,360 bp
Longest Scaffold 103,795 bp
Genome Size 2,123,616 bp
Protein Count 2,127
Coding Density 85.35%
GC Percentage 39.76%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5381_3#2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682598
Country Thailand: Maela
Date 2015-7-16
Genbank Assembly Accession GCA_001162905.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,307
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 32
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 8904
Translation Table 11
tRNA Count (total) 29
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPNA00000000.1