Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers PT1430
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 94.68%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 2
23S Count 2
tRNA Count 17
Contig Count 291
N50 Contigs 13,386 bp
Longest Contig 45,780 bp
Scaffold Count 199
N50 Scaffolds 22,897 bp
Longest Scaffold 69,612 bp
Genome Size 2,189,894 bp
Protein Count 2,220
Coding Density 83.82%
GC Percentage 39.54%
Ambiguous Bases 4
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6569_4#6
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1020587
Country Portugal
Date 2015-7-16
Genbank Assembly Accession GCA_001159805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,396
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 92
Species Taxid 1313
SSU Count 2
Submitter SC
Taxid 1313
Total Gap Length 25981
Translation Table 11
tRNA Count (total) 27
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPUA00000000.1