Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers spnIC38
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.15%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 245
N50 Contigs 18,260 bp
Longest Contig 62,964 bp
Scaffold Count 221
N50 Scaffolds 19,723 bp
Longest Scaffold 108,844 bp
Genome Size 2,185,750 bp
Protein Count 2,228
Coding Density 85.59%
GC Percentage 39.50%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5390_1#3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682253
Country Iceland: Reykjavik
Date 2015-7-15
Genbank Assembly Accession GCA_001159065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 2,380
Refseq Category na
Seq Rel Date 2015/07/15
Spanned Gaps 24
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 7197
Translation Table 11
tRNA Count (total) 32
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPKS00000000.1