Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
NCBI Strain Identifiers CH4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 61
N50 Contigs 238,637 bp
Longest Contig 1,046,711 bp
Scaffold Count 60
N50 Scaffolds 257,676 bp
Longest Scaffold 1,046,711 bp
Genome Size 4,974,751 bp
Protein Count 4,745
Coding Density 87.58%
GC Percentage 52.11%
Ambiguous Bases 8
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8490_2#47
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1568493
Country Canada
Date 2015-7-17
Genbank Assembly Accession GCA_001154585.1
Genome Category Isolate
Genome Representation full
Isolate CH4
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 5,056
Refseq Category na
Seq Rel Date 2015/07/17
Spanned Gaps 1
Species Taxid 28901
SSU Count 4
Submitter SC
Taxid 85569
Total Gap Length 14
Translation Table 11
tRNA Count (total) 80
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CQHH00000000.1