Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers SMRU1876
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 1.46%
CheckM Strain Heterogeneity 63.64
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 82
N50 Contigs 66,499 bp
Longest Contig 115,721 bp
Scaffold Count 79
N50 Scaffolds 66,499 bp
Longest Scaffold 196,151 bp
Genome Size 2,121,738 bp
Protein Count 2,133
Coding Density 85.92%
GC Percentage 39.52%
Ambiguous Bases 32
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6823_2#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1025694
Country Thailand: Maela
Date 2015-7-13
Genbank Assembly Accession GCA_001153445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,311
Refseq Category na
Seq Rel Date 2015/07/13
Spanned Gaps 3
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 355
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CKUO00000000.1