Yersinia massiliensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia massiliensis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia frederiksenii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia frederiksenii
NCBI Strain Identifiers IP23698
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000312485.1)
Genome Characteristics
CheckM Completeness 99.95%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 96
N50 Contigs 97,370 bp
Longest Contig 287,359 bp
Scaffold Count 58
N50 Scaffolds 170,304 bp
Longest Scaffold 677,075 bp
Genome Size 4,727,397 bp
Protein Count 4,179
Coding Density 86.21%
GC Percentage 47.55%
Ambiguous Bases 37
GTDB representative GCA_000312485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 4821_8#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA859881
Country Spain
Date 2015-7-16
Genbank Assembly Accession GCA_001151185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sea water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,164
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 38
Species Taxid 29484
SSU Count 1
Submitter SC
Taxid 29484
Total Gap Length 2529
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPZP00000000.1