Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers MDUST18
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 48
N50 Contigs 185,350 bp
Longest Contig 488,966 bp
Scaffold Count 47
N50 Scaffolds 185,350 bp
Longest Scaffold 488,966 bp
Genome Size 4,720,416 bp
Protein Count 4,582
Coding Density 87.26%
GC Percentage 52.03%
Ambiguous Bases 7
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 8490_5#18
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1572835
Country Fiji
Date 2015-7-11
Genbank Assembly Accession GCA_001148225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,795
Refseq Category na
Seq Rel Date 2015/07/11
Spanned Gaps 1
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 30
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CJPN00000000.1