Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 2;22A;22A/2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.11%
CheckM Contamination 0.21%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 105
N50 Contigs 46,503 bp
Longest Contig 131,379 bp
Scaffold Count 86
N50 Scaffolds 56,525 bp
Longest Scaffold 181,985 bp
Genome Size 2,017,119 bp
Protein Count 1,949
Coding Density 85.66%
GC Percentage 39.63%
Ambiguous Bases 9
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5192_8#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA770007
Country Denmark
Date 2015-7-16
Genbank Assembly Accession GCA_001147325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,137
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 19
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 5907
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPRK00000000.1