Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers 301347;6a
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 86
N50 Contigs 125,607 bp
Longest Contig 297,642 bp
Scaffold Count 85
N50 Scaffolds 130,857 bp
Longest Scaffold 297,642 bp
Genome Size 4,374,685 bp
Protein Count 4,089
Coding Density 90.44%
GC Percentage 65.61%
Ambiguous Bases 5
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7414_6#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1317652
Country South Africa: Cape Town
Date 2015-7-16
Genbank Assembly Accession GCA_001142645.1
Genome Category Isolate
Genome Representation full
Isolate 6a
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,248
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 1
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 16
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPVP00000000.1