Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 16 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 6A
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 50.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 16
Contig Count 592
N50 Contigs 6,198 bp
Longest Contig 37,917 bp
Scaffold Count 590
N50 Scaffolds 6,198 bp
Longest Scaffold 37,917 bp
Genome Size 2,015,690 bp
Protein Count 2,215
Coding Density 87.11%
GC Percentage 39.96%
Ambiguous Bases 17
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6259_6#21
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA974700
Country Thailand: Maela
Date 2015-7-11
Genbank Assembly Accession GCA_001142065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,318
Refseq Category na
Seq Rel Date 2015/07/11
Spanned Gaps 2
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 83
Translation Table 11
tRNA Count (total) 27
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CKAO00000000.1