Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers 1021624
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 46
N50 Contigs 204,304 bp
Longest Contig 488,918 bp
Scaffold Count 45
N50 Scaffolds 204,304 bp
Longest Scaffold 488,918 bp
Genome Size 4,747,387 bp
Protein Count 4,612
Coding Density 87.22%
GC Percentage 52.06%
Ambiguous Bases 3
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 9475_6#45
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1903871
Country Malawi
Date 2015-7-11
Genbank Assembly Accession GCA_001141825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,858
Refseq Category na
Seq Rel Date 2015/07/11
Spanned Gaps 1
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 12
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CJTB00000000.1