Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 9705+05087
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 123
N50 Contigs 39,424 bp
Longest Contig 106,313 bp
Scaffold Count 101
N50 Scaffolds 56,346 bp
Longest Scaffold 107,487 bp
Genome Size 2,217,516 bp
Protein Count 2,273
Coding Density 85.77%
GC Percentage 39.52%
Ambiguous Bases 2
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7444_8#16
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1408328
Country Iceland: Reykjavik
Date 2015-7-16
Genbank Assembly Accession GCA_001139305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Blood
Latitude Longitude None
Molecule Count N/A
CDS Count 2,451
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 22
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 5936
Translation Table 11
tRNA Count (total) 42
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPSV00000000.1