Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B02850
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 96.69%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 262
N50 Contigs 14,578 bp
Longest Contig 38,816 bp
Scaffold Count 148
N50 Scaffolds 34,996 bp
Longest Scaffold 106,465 bp
Genome Size 2,024,703 bp
Protein Count 1,947
Coding Density 82.58%
GC Percentage 39.78%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5381_1#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682330
Country Thailand: Maela
Date 2015-7-15
Genbank Assembly Accession GCA_001136765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,147
Refseq Category na
Seq Rel Date 2015/07/15
Spanned Gaps 114
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 34597
Translation Table 11
tRNA Count (total) 28
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPKG00000000.1