Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers 400554;15a
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 96
N50 Contigs 125,754 bp
Longest Contig 279,663 bp
Scaffold Count 96
N50 Scaffolds 125,754 bp
Longest Scaffold 279,663 bp
Genome Size 4,372,399 bp
Protein Count 4,085
Coding Density 90.38%
GC Percentage 65.60%
Ambiguous Bases 1
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 7414_6#30
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1317654
Country South Africa: Stellenbosch
Date 2015-7-16
Genbank Assembly Accession GCA_001133985.1
Genome Category Isolate
Genome Representation full
Isolate 15a
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,244
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CQDK00000000.1