Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 0123
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 95.39%
CheckM Contamination 0.24%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 216
N50 Contigs 20,578 bp
Longest Contig 82,899 bp
Scaffold Count 155
N50 Scaffolds 30,850 bp
Longest Scaffold 112,877 bp
Genome Size 2,137,706 bp
Protein Count 2,132
Coding Density 84.91%
GC Percentage 39.74%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5919_1#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1022920
Country Poland
Date 2015-7-14
Genbank Assembly Accession GCA_001132665.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,263
Refseq Category na
Seq Rel Date 2015/07/14
Spanned Gaps 61
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 18596
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CMWO00000000.1