Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 09B09045
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 2.19%
CheckM Strain Heterogeneity 96.77
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 92
N50 Contigs 43,308 bp
Longest Contig 93,076 bp
Scaffold Count 90
N50 Scaffolds 43,308 bp
Longest Scaffold 93,076 bp
Genome Size 2,079,785 bp
Protein Count 2,073
Coding Density 86.00%
GC Percentage 39.73%
Ambiguous Bases 11
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5429_8#4
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682276
Country Thailand: Maela
Date 2015-7-15
Genbank Assembly Accession GCA_001128505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,260
Refseq Category na
Seq Rel Date 2015/07/15
Spanned Gaps 2
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 33
Translation Table 11
tRNA Count (total) 35
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPLI00000000.1