Mycobacterium tuberculosis
Isolate MQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers A70144_1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 89.46%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 806
N50 Contigs 9,982 bp
Longest Contig 63,274 bp
Scaffold Count 317
N50 Scaffolds 33,059 bp
Longest Scaffold 160,502 bp
Genome Size 4,296,648 bp
Protein Count 4,558
Coding Density 83.51%
GC Percentage 65.24%
Ambiguous Bases 15
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6280_6#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA787750
Country Uganda: Kampala
Date 2015-7-16
Genbank Assembly Accession GCA_001121325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,513
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 489
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 153493
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CQFV00000000.1