Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers SMRU2448
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.77%
CheckM Contamination 1.05%
CheckM Strain Heterogeneity 66.67
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 49
N50 Contigs 104,125 bp
Longest Contig 225,539 bp
Scaffold Count 46
N50 Scaffolds 106,253 bp
Longest Scaffold 225,539 bp
Genome Size 2,155,483 bp
Protein Count 2,210
Coding Density 85.91%
GC Percentage 39.58%
Ambiguous Bases 45
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6949_2#24
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1029156
Country Thailand: Maela
Date 2015-7-13
Genbank Assembly Accession GCA_001121145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,380
Refseq Category na
Seq Rel Date 2015/07/13
Spanned Gaps 3
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 193
Translation Table 11
tRNA Count (total) 39
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CLOX00000000.1