Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers SMRU2279
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.27%
CheckM Contamination 4.2%
CheckM Strain Heterogeneity 98.9
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 72,460 bp
Longest Contig 157,979 bp
Scaffold Count 64
N50 Scaffolds 76,133 bp
Longest Scaffold 157,979 bp
Genome Size 2,218,621 bp
Protein Count 2,185
Coding Density 86.22%
GC Percentage 39.77%
Ambiguous Bases 19
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6983_3#71
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1026001
Country Thailand: Maela
Date 2015-7-13
Genbank Assembly Accession GCA_001119625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,382
Refseq Category na
Seq Rel Date 2015/07/13
Spanned Gaps 3
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 33
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CLVW00000000.1