Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers 1017142
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 44
N50 Contigs 185,725 bp
Longest Contig 488,950 bp
Scaffold Count 44
N50 Scaffolds 185,725 bp
Longest Scaffold 488,950 bp
Genome Size 4,735,028 bp
Protein Count 4,593
Coding Density 87.25%
GC Percentage 52.02%
Ambiguous Bases 7
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 9475_6#42
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1903865
Country Malawi
Date 2015-7-11
Genbank Assembly Accession GCA_001112065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,841
Refseq Category na
Seq Rel Date 2015/07/11
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CJSX00000000.1