Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 6B
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.6%
CheckM Contamination 0.32%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 112
N50 Contigs 38,280 bp
Longest Contig 154,536 bp
Scaffold Count 100
N50 Scaffolds 38,639 bp
Longest Scaffold 187,435 bp
Genome Size 2,233,447 bp
Protein Count 2,293
Coding Density 86.14%
GC Percentage 39.43%
Ambiguous Bases 33
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6630_3#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1023824
Country Thailand: Maela
Date 2015-7-11
Genbank Assembly Accession GCA_001109545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,450
Refseq Category na
Seq Rel Date 2015/07/11
Spanned Gaps 12
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 323
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CKFQ00000000.1