Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers LMG1048
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 96.87%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 185
N50 Contigs 19,939 bp
Longest Contig 79,636 bp
Scaffold Count 110
N50 Scaffolds 35,620 bp
Longest Scaffold 106,697 bp
Genome Size 2,065,226 bp
Protein Count 2,028
Coding Density 83.51%
GC Percentage 39.73%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5789_2#10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1020564
Country China: Taiwan
Date 2015-7-16
Genbank Assembly Accession GCA_001108185.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source not known
Latitude Longitude None
Molecule Count N/A
CDS Count 2,225
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 75
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 22455
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPTO00000000.1