Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers spnIC195
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.17%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 324
N50 Contigs 12,202 bp
Longest Contig 50,793 bp
Scaffold Count 312
N50 Scaffolds 12,446 bp
Longest Scaffold 51,415 bp
Genome Size 2,168,598 bp
Protein Count 2,235
Coding Density 86.40%
GC Percentage 39.51%
Ambiguous Bases N/A
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5392_6#11
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682562
Country Iceland: Reykjavik
Date 2015-7-16
Genbank Assembly Accession GCA_001097505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,343
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 12
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 4057
Translation Table 11
tRNA Count (total) 31
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPUQ00000000.1