Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 08B05980
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.42%
CheckM Contamination 1.39%
CheckM Strain Heterogeneity 91.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 121
N50 Contigs 31,655 bp
Longest Contig 81,293 bp
Scaffold Count 113
N50 Scaffolds 32,407 bp
Longest Scaffold 83,377 bp
Genome Size 2,137,746 bp
Protein Count 2,174
Coding Density 86.43%
GC Percentage 39.71%
Ambiguous Bases 24
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 5366_5#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA682464
Country Thailand: Maela
Date 2015-7-16
Genbank Assembly Accession GCA_001092005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,352
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 8
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 430
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPQY00000000.1