Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 9701+10122
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 99.24%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 33.33
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 127
N50 Contigs 41,660 bp
Longest Contig 123,859 bp
Scaffold Count 109
N50 Scaffolds 59,197 bp
Longest Scaffold 123,859 bp
Genome Size 2,214,160 bp
Protein Count 2,293
Coding Density 86.17%
GC Percentage 39.55%
Ambiguous Bases 10
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 7444_8#13
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1408320
Country Iceland: Akureyri
Date 2015-7-16
Genbank Assembly Accession GCA_001091765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source middle ear
Latitude Longitude None
Molecule Count N/A
CDS Count 2,461
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 18
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 4429
Translation Table 11
tRNA Count (total) 44
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CPTX00000000.1