Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers A70329
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 98.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 356
N50 Contigs 25,688 bp
Longest Contig 104,697 bp
Scaffold Count 230
N50 Scaffolds 46,267 bp
Longest Scaffold 147,284 bp
Genome Size 4,297,587 bp
Protein Count 4,247
Coding Density 89.82%
GC Percentage 65.36%
Ambiguous Bases 119
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6280_7#5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA787717
Country Uganda: Kampala
Date 2015-7-16
Genbank Assembly Accession GCA_001090285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source sputum
Latitude Longitude None
Molecule Count N/A
CDS Count 4,327
Refseq Category na
Seq Rel Date 2015/07/16
Spanned Gaps 126
Species Taxid 1773
SSU Count 1
Submitter SC
Taxid 1773
Total Gap Length 5252
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CQGC00000000.1