Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers 1010996
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 43
N50 Contigs 185,156 bp
Longest Contig 466,390 bp
Scaffold Count 42
N50 Scaffolds 185,156 bp
Longest Scaffold 466,390 bp
Genome Size 4,702,892 bp
Protein Count 4,566
Coding Density 87.27%
GC Percentage 52.10%
Ambiguous Bases 3
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 9475_6#1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1903825
Country Malawi
Date 2015-7-11
Genbank Assembly Accession GCA_001089805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,800
Refseq Category na
Seq Rel Date 2015/07/11
Spanned Gaps 1
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 26
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CJSD00000000.1