Streptococcus pneumoniae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pneumoniae
NCBI Strain Identifiers 0145
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457635.1)
Genome Characteristics
CheckM Completeness 97.99%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 83.33
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 215
N50 Contigs 19,446 bp
Longest Contig 91,498 bp
Scaffold Count 179
N50 Scaffolds 28,126 bp
Longest Scaffold 92,647 bp
Genome Size 2,096,292 bp
Protein Count 2,121
Coding Density 84.79%
GC Percentage 39.66%
Ambiguous Bases 13
GTDB representative GCA_001457635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 6930_7#8
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA1022809
Country Thailand
Date 2015-7-14
Genbank Assembly Accession GCA_001087925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Nasopharynx
Latitude Longitude None
Molecule Count N/A
CDS Count 2,277
Refseq Category na
Seq Rel Date 2015/07/14
Spanned Gaps 36
Species Taxid 1313
SSU Count 1
Submitter SC
Taxid 1313
Total Gap Length 10114
Translation Table 11
tRNA Count (total) 41
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CNAH00000000.1