Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers SGB108
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.14%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 203
N50 Contigs 84,762 bp
Longest Contig 249,596 bp
Scaffold Count 60
N50 Scaffolds 185,383 bp
Longest Scaffold 392,804 bp
Genome Size 4,806,052 bp
Protein Count 4,635
Coding Density 85.19%
GC Percentage 52.05%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 10349_1#91
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2072800
Country India
Date 2015-7-10
Genbank Assembly Accession GCA_001086325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,943
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 143
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 48002
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIYP00000000.1