Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers MDUST156
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 75
N50 Contigs 144,657 bp
Longest Contig 279,125 bp
Scaffold Count 59
N50 Scaffolds 204,515 bp
Longest Scaffold 489,011 bp
Genome Size 4,745,480 bp
Protein Count 4,606
Coding Density 86.96%
GC Percentage 52.06%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 10493_1#19
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2142785
Country Pakistan
Date 2015-7-9
Genbank Assembly Accession GCA_001080065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,863
Refseq Category na
Seq Rel Date 2015/07/09
Spanned Gaps 16
Species Taxid 28901
SSU Count 3
Submitter SC
Taxid 90370
Total Gap Length 4762
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CEYC00000000.1