Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhi
NCBI Strain Identifiers 231697
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 42
N50 Contigs 207,392 bp
Longest Contig 492,693 bp
Scaffold Count 41
N50 Scaffolds 207,392 bp
Longest Scaffold 492,693 bp
Genome Size 4,700,571 bp
Protein Count 4,562
Coding Density 87.30%
GC Percentage 52.10%
Ambiguous Bases 2
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name 10071_3#22
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2059021
Country South Africa
Date 2015-7-10
Genbank Assembly Accession GCA_001079385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Not known
Latitude Longitude None
Molecule Count N/A
CDS Count 4,786
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 1
Species Taxid 28901
SSU Count 2
Submitter SC
Taxid 90370
Total Gap Length 18
Translation Table 11
tRNA Count (total) 69
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CIQE00000000.1