Streptococcus pseudopneumoniae_C
Isolate HQ 5S/16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pseudopneumoniae_C
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pseudopneumoniae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus pseudopneumoniae
NCBI Strain Identifiers 888_SPSE
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.65%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 15
Contig Count 208
N50 Contigs 33,485 bp
Longest Contig 140,360 bp
Scaffold Count 208
N50 Scaffolds 33,485 bp
Longest Scaffold 140,360 bp
Genome Size 2,078,715 bp
Protein Count 2,054
Coding Density 88.90%
GC Percentage 39.80%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM107482v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03198094
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001074825.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,112
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 0
Species Taxid 257758
SSU Count 1
Submitter University of Washington
Taxid 257758
Total Gap Length 0
Translation Table 11
tRNA Count (total) 28
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JUPG00000000.1