Staphylococcus epidermidis
Isolate HQ 5S/16S/23S 9 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
NCBI Strain Identifiers 520_SEPI
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742205.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.4%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 3
23S Count 1
tRNA Count 9
Contig Count 125
N50 Contigs 56,035 bp
Longest Contig 133,176 bp
Scaffold Count 117
N50 Scaffolds 56,035 bp
Longest Scaffold 133,176 bp
Genome Size 2,539,779 bp
Protein Count 2,412
Coding Density 84.13%
GC Percentage 32.06%
Ambiguous Bases 7
GTDB representative GCA_006742205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM107321v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197715
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001073215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,509
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 8
Species Taxid 1282
SSU Count 3
Submitter University of Washington
Taxid 1282
Total Gap Length 711
Translation Table 11
tRNA Count (total) 17
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVDV00000000.1