Staphylococcus epidermidis
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
NCBI Strain Identifiers 422.rep2_SEPI
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742205.1)
Genome Characteristics
CheckM Completeness 99.63%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 3
tRNA Count 18
Contig Count 90
N50 Contigs 61,653 bp
Longest Contig 196,970 bp
Scaffold Count 88
N50 Scaffolds 65,484 bp
Longest Scaffold 210,849 bp
Genome Size 2,570,646 bp
Protein Count 2,407
Coding Density 83.39%
GC Percentage 31.98%
Ambiguous Bases 3
GTDB representative GCA_006742205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM107288v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03197615
Country USA: WA
Date 2015-7-10
Genbank Assembly Accession GCA_001072885.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,508
Refseq Category na
Seq Rel Date 2015/07/10
Spanned Gaps 2
Species Taxid 1282
SSU Count 3
Submitter University of Washington
Taxid 1282
Total Gap Length 200
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JVHR00000000.1